Core Research Facilities


Name Location Web Site Contact
Stanford Nanocharacterization Laboratory (SNL) McCullough snl.stanford.edu Various - check website under Equipment
 Description: The Stanford Nanocharacterization Laboratory (SNL), housed within the Geballe Laboratory for Advanced Materials, is a shared facility whose mission is to assist researchers in acquiring high quality, useful data and insight using modern facilities for the characterization of materials. The equipment includes a variety of modern high-resolution microscopes (electron, ion, scanning probe, etc.), X-ray diffractometers, and surface science analytical instruments. Some impact areas include micro- and nano-electronics, nanophotonics, biomaterials, quantum structures, micromagnetic structures, organic and nanotube devices, and self-assembled molecules.
Stanford Nano Center (SNC) Center for Nanoscale Science and Technology snc.stanford.edu Various - check website
 Description: The Stanford Nano Center (SNC) shared facilities include some of the most advanced nanoscale patterning and characterization equipment available, complementing the nearby Stanford Nanocharacterization Lab (SNL) and Stanford Nanofabrication Facility (SNF). Much of the space is specifically designed to provide for the stringent requirements on the control of vibration, acoustics, and electromagnetic interference that are essential for the manipulation of matter down to the molecular and atomic scale.
Stanford Biomaterials and Advanced Drug Delivery Laboratory (bioADD) Grant S380
300 Pasteur Dr.,
Stanford, CA 94035
bioadd.stanford.edu/ Jayakumar Rajadas
(650) 724-7710
 Description: Stanford Biomaterials and Advanced Drug Delivery Laboratory (bioADD) is a cutting edge research facility located at Stanford University . Today’s problems in drug design require complex answers to achieve effective delivery and treatment. The Stanford BioADD Laboratory helps to solve these problems with advanced modern technology and innovative solutions. Specializing in the creation of biomaterials and drug delivery agents, the laboratory lends its expertise toward designing drug formulations and developing smart materials for biomedical applications.
Computational Services and Bioinformatics Facility (CSBF) Beckman Center B062D cmgm.stanford.edu Lee Kozar
(650) 725-4483
 Description: Computer resources for biomedical research at Stanford. Membership access to computer hardware; Mac, PC, and UNIX software; consulting; and workshops. Available Software
Cell Sciences Imaging Facility (CSIF) Beckman CMGM B050 microscopy.stanford.edu Jon Mullholland
(650) 725-7532
 Description: Electron microscopy preparation and imaging services: advanced fluorescence and electron microscopy imaging, including confocal microscopy, 2-photon live cell imaging, deconvolution wide field microscopy, transmission and scanning electron microscopy.
Department of Surgery FACScan Center (Transplant Surgery FACScan Service Center) Medical School Lab Surge Building , (Lucas Center) P335 www.stanford.edu/group/TIL/FACScan.htm Aleishia Harris/Transplant Immunobiology Lab
(650) 725-6616
 Description: Flow Cytometry: three fluorescence detectors to read emission spectra from a variety of dyes, including FITC, PE, CY5, propidium Iodide, and others.
Developmental Biology Fly Facility (Fly Room, Fly Media Service Center) Beckman B367 flycenter.stanford.edu Todd Galitz
650-725-7659
 Description: Fly food and media for various School of Medicine labs: fly bottle; dextrose rack; molasses rack; fly cage; small, medium , large, and xl caps; fly house collection; seeded bottle.
FACS Facility (Fluorescence Activated Cell Sorting Facility) Beckman CMGM B016 facs.stanford.edu/ Marty Bigos
650-723-6959
 Description: Full-service sorting and analysis. Five sorters and three analyzers available. Consulting on experimental design and data analysis. Flowjo site license administration.
Stanford Funtional Genomics Facility (SFGF) CCSR 0120 www.microarray.org John Coller
650-736-2434
 Description: The Stanford Functional Genomics Facility (SFGF) provides equipment and services for high-throughput sequencing (Illumina), gene expression, array CGH, and genotyping utilizing microarrays (Illumina, Agilent, Nimblegen) and real-time PCR.  SFGF also provides BD antibodies, Open Biosystems clones, and custom DNA and protein microarrays.  The facility is accessible 24/7.
High-Throughput Bioscience Center (HTBC) CCSR 0133 htbc.stanford.edu/ David Solow-Cordero
(650) 725-6002
 Description: Fully automated high-throughput screening (HTS) and high content screening of compound, genomic cDNA, and genomic siRNA libraries. Consultation and assistance for assay development, design, and analysis and for instrumentation training. Access to microplate based liquid handling equipment (SciClone ALH3000, Agilent Bravo and VPrep, Plate Washers, Reagent/Cells Dispensers), for plate replication, reformatting, reagent/cell dispensing and washing. Access to multi-mode microplate based detection equipment (AnalystGT, Flexstation and Tecan Infinite M1000 96-384-well plate readers) for fluorescence (FP, HTRF, FI, FLIPR, FRET), luminescence, and absorbance reads. Access to automated microplate imaging equipment with the ImageXpress Micro (epi-fluorescence, brightfield/phase contrast, environmental control options).
Human Immune Monitoring Center (HIMC) Fairchild D033 and CCSR 0128 http://himc.stanford.edu Holden Maecker, PhD
(650) 723-1671
 Description: Analysis of clinical samples by multiplexed immunoassays (Luminex and MesoScale Discovery), flow cytometry (immunophenotyping, phosphoepitope analysis, and intracellular cytokine staining), capillary nanoimmunoassay (NanoPro); and microfluidic qPCR (BioMark) and other genomic assays.
Richard M. Lucas Center for Imaging Lucas Center P162-168, P173-176,P021A-E,P128 pichon.stanford.edu/ research/Lucas_Center.html Anne Sawyer
(650) 725-9697
 Description: Apply medical imaging technology to fundamental physiologic and patho-physiologic studies involving humans and animal models. Advance medical imaging technology to improve health and patient care. Provide educational opportunities to researchers, clinicians, and students. Serve the academic and industrial community. Whole Body Imaging for humans and animals models. Equipment includes: Three 3.0 Tesla MRI systems, 7.0 Tesla MRI system and Fluoro Suite.
Magnetic Resonance Laboratory (SMRL) Fairchild Rm D026, and Organic Chemistry Bldg Rm 101 smrl.stanford.edu Corey Liu
(650) 724-7445
 Description: Nuclear Magnetic Resonance (NMR) spectroscopy, instrumentation, and expertise. Primarily solution state spectroscopy of bio-molecules - also including, but not limited to, studies of polymers, minerals, soils, extracts. Equipment and services include: 800 MHz Varian Inova Spectrometer, 600 MHz Varian Inova Spectrometer, 500 MHz Bruker Avance Spectrometer, and staff assistance/consultation.
Stanford University Mass Spectrometry (SUMS) Mudd 175 mass-spec.stanford.edu Allis Chien
(650) 723-0710
 Description: Stanford's state-of-the-art, user friendly on-campus MS resource which supports researchers at Stanford and beyond. Capabilities include routine analyses such as nanoLC-MS/MS protein identification; LC-MS based amino acid analysis; mass determination of small molecules, peptides, and proteins; accurate mass determinations; LC-MS, MSn, and high-resolution MS. Custom projects encompass diverse areas of proteomics, metabolomics, metabolite identification, non-covalent interactions, and targeted quantitation; examples include characterization of post-translational modifications, identification of protein binding partners, proteomic and metabolomic profiling, and biomarker verification..
Neuroscience Microscopy Service Lokey Stem Cell Building (SIM1), Suite G0901 nisms.stanford.edu Andrew Olson, PhD
(650) 723-8818
 Description: 2-photon microscopy: both in vivo and tissue slice imaging and photoactivation. Confocal microscopy: time-lapse confocal imaging with environmental control, spectral imaging, and standard fixed-tissue imaging. Fluorescence microscopy: array tomography data acquisition and analysis.
Parallel Computer Cluster (Computational Structural Biology) Fairchild, D-100 biox2.stanford.edu Michael Levitt
(650) 276-0500
 Description: The Hybrid Shared-Memory / Massively-Parallel Commodity Cluster provides cost-effective super-computing at Stanford. The machine, which was in the top 50 most powerful supercomputers in the world when first tested, has now dropped to a position between 300 and 400, showing how world-wide super computer power keeps growing. With its 2,200 compute cores, and its high-speed Infiniband communication channel, this machine is still able to cater for the needs of its diverse community of over 260 users in almost 50 groups from over 20 different departments at Stanford. The machine has been reliable and available over 99% of the time. The machine has been very cost-effective in its total cost of ownership: complete support of the system has been provided by one half-time employee. We have achieved this low total cost of ownership by very careful design of the configuration as well as a general reluctance to make changes.
Stanford Behavioral and Functional Neuroscience Laboratory Stanford University sbfnl.stanford.edu/ Mehrdad Shamloo, PhD
650-725-3152
 Description: Stanford behavioral and functional neuroscience laboratory (SBFNL) is a state-of-the art facility designed to serve as a time-efficient and cost-effective service center for researchers in need of behavioral and neuropharmacological analyses in rodents. We will provide expertise in all aspects related to the design and implementation of behavioral experiments as well as data analysis and interpretation. The core is fully equipped to accommodate a full battery of behavioral tests relevant to learning and memory, sensory gating, place/fear conditioning, motor function, nociception, and anxiety-related behaviors. We are specialized in genetic and pharmacological phenotyping in both mouse and rat. In addition the center provides expertise in an array of acute and chronic experimental models of neurodegenerative disorders such as stroke and ischemic brain injury.
Stanford Center for Innovation and In Vivo Imaging Clark Center, S040 http://sci3.stanford.edu/ Tim Doyle
(650) 724-8250
 Description: The Stanford Center for Innovation in In Vivo Imaging (Sci^3) is a small animal imaging facility that allows non-invasive studies on animals such as mice and rats. In addition to instruments routinely used in the clinic, such as ultrasound, microCT, microPET, microSPECT/CT and MRI (each optimized for animal research), the facility also has instruments to investigate bio-distribution of molecular imaging probes such as GFP, fluorescent markers and bioluminescent proteins in these animals. Access to surgical benches and supplies is available. Instrument training is provided for free during regular sessions, which are posted through an email service. In addition, full computer support and data archiving is provided to investigators.
Stanford Nanofabrication Facility (SNF) Paul G Allen Building snf.stanford.edu John Shott
(650) 725-3715
 Description: The Stanford Nanofabrication Facility provides advanced micro- and nanofabrication equipment and expertise. Available tools and techniques include: electron and optical lithography, deposition of a variety of metal and dielectric layers, wet and dry etching techniques, and high temperature annealing and thin-film depositions.
Stanford Synchrotron Radiation Lightsource (SSRL) SLAC http://www-ssrl.slac.stanford.edu/
http://www-ssrl.slac.stanford.edu/science/smbgroup.html
Cathy Knotts
(650) 926-3191
 Description: SSRL is a DOE Office of Science National User Facility that provides synchrotron radiation facilities for the investigation of structure of various forms of matter, ranging from biological and medical to nano-materials and environmental, and at length scales from atomic and molecular to cm. The facility supports (with instrumentation and staff) researchers using macromolecular crystallography, small-angle x-ray scattering, x-ray imaging and microscopy, x-ray absorption spectroscopy, and scattering techniques, among others. Access is obtained by submitting a proposal.
Tissue Bank (Pathology Tissue Bank) SIM1 Ste. G0815 tissuebank.stanford.edu Reetesh Pai
(650) 723-7211
 Description: Activities and services include collecting and banking freshly-frozen tissue specimens for viable cell studies, processing and banking blood components, maintaining a tissue database and coordinating patient consent and assuring regulatory compliance.
Transgenic Mouse Research Facility CCSR 0137 med.stanford.edu/transgenic/ Yanru Chen-Tsai
(650) 498-7604
 Description: Mouse models for gene of interest: transgenic mouse production; targeted ES cell clone production; chimeric mouse production; sperm/embryo cryopreservation; strain rederivation; xenograft tuomr models; drug dosing; toxicity studies.
Veterinary Service Center (VSC, formerly DLAM) (PAN) RAF 1 & 2 med.stanford.edu/compmed/animal_care/ Reese Zazio
(650) 725-3882
 Description: The Veterinary Service Center assures that the use of animals is humane and complies with all relevant policies and legal requirements. The functions of the VSC include: provision of animal husbandry services; provision of veterinary care; oversight of animal holding areas including laboratories where animal procedures are performed; procurement, acquisition, and exportation of animals for research and teaching; provision of technical services, training, and specialized facilities and equipment to facilitate animal research.
Visual Art Services (Instructual Media, VAS) MSOB X100 www.stanford.edu/dept/VAS/ Jim Day
(650) 723-5401
 Description: Services for photography; medical photography; digital video, technical and scientific imaging, digital signage, visual art design, logos and identity signatures, media conversion and digitization, presentation designs, class and one-on-one training and project consultation, event communications coordination, film conversion, poster presentation design and production, graphic publication and illustration; electronic imaging and scanning; graphic design and illustration; business cards, invitations, digital printing, media project coordinator, time-lapse imaging, selective-spectrum imaging, scanning and image enhancements.
Neuroscience Gene Vector and Virus Core (GVVC) Lorry I. Lokey Stem Cell Research Building, Room G1027 http://ngvvc.stanford.edu Michael Lochrie [mlochrie]
650-723-0588
 Description: Provides virus production (e.g., AAV, lentiviruses, retroviruses, and others) and associated molecular biology (e.g., plasmid construction, plasmid production, PCR, Q-PCR, mutagenesis, and others) services.
Protein and Nucleic Acid (PAN) Beckman CMGM B065 http://pan.stanford.edu Michael Eckart
(650) 723-1907
 Description: The Protein and Nucleic Acid (PAN) Facility is a multifaceted biotechnology fee-for-service laboratory. The Facility offers a diverse array of instrumentation and technical capabilities in Molecular Genetics and Protein Analytics. In Molecular Genetics the services include Gene Expression and Genotypring (Affymetrix microarray), quantitative methylation and mutation analysis (PyroMark), qPCR, DNA sequencing and fragment analysis, Nucleic Acid QC (Agilent Bioanalyzer) and Oligonucleotide synthesis. For protein characterization the laboratory offers Protein Sequencing, Peptide Synthesis, Protein Identification (MALDI) and Biomolecular interaction analysis (Surface Plasmon Resonance – Biacore). Each of our services is staffed and maintained by experienced scientists. We can provide as much assistance as needed, from initial study design through all the procedures needed for an experiment to the final interpretation and analysis of data. Our services include standard assays, as well as customized services. We are always interested in developing new assays, or adapting existing established assays to address specific research questions.

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